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l11 expression  (Cytiva Europe)
99
Cytiva Europe l11 expression
a Codon–anticodon stability. Drop-off of P-site peptidyl-tRNA Phe from the UUU C (gray) or m 1 Ψm 1 Ψm 1 Ψ C (maroon) codon and of P-site peptidyl-tRNA Ala from the GCA U codon (black). Shown are mean values with error bars representing SE from n = 3 independent biological replicates. Asterisks represent statistically significant differences between UUU C and m 1 Ψm 1 Ψm 1 Ψ C, according to a two-way repeated-measures ANOVA test. ** P = 0.0041 (F(1, 4) = 34.90; df = 1). Lines are single (black) or double (gray and maroon) exponential decay functions (“Methods” section). Exact values are summarized in Supplementary Table . b Schematic of smFRET experiment to monitor tRNA state in the P site. In the P/P state, peptidyl-tRNA Phe (Cy5) (purple star) resides far from <t>L11-Cy3</t> (green star; FRET 0.2). Transition to the CHI state leads to an increase in FRET to 0.4. mRNA is shown as a solid line, with codons depicted as bold lines. c Static traces. Representative smFRET time trace of donor Cy3 (green) and acceptor Cy5 (purple) fluorescence intensities (F.I.), calculated FRET (blue), and hidden Markov modeling fit (HMM, black), corresponding to peptidyl-tRNA Phe in the P/P state (FRET 0.2). arb. units, arbitrary units. d Dynamic traces. Same as ( c ) for traces showing reversible transitions between FRET 0.2 (P/P) and FRET 0.35 states (CHI). e Percentage of traces showing stable FRET 0.2 (P/P; gray) and fluctuations between FRET 0.2 and FRET 0.35 (CHI) states (maroon) on UUU C and m 1 Ψm 1 Ψm 1 Ψ C codons. Shown are values of individual replicates (black circles) and the mean with error bars representing SE from n = 3 independent biological replicates, each with n = 10 technical replicates. Exact values are summarized in Supplementary Table . Number of traces ( N ): P/P, N = 671 for UUU C, N = 576 for m 1 Ψm 1 Ψm 1 Ψ C; CHI, N = 163 for UUU C, N = 324 for m 1 Ψm 1 Ψm 1 Ψ C. f FRET population distribution histogram of the POST complex on UUU and m 1 Ψm 1 Ψm 1 Ψ, showing the relative abundance of the P/P (gray shade) and CHI (maroon shade) states. Shown are data from n = 3 biological replicates, with n = 10 technical replicates each. Exact values are summarized in Supplementary Table . Source data are provided as a Source Data file.
L11 Expression, supplied by Cytiva Europe, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 99 stars, based on 1 article reviews
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pan mono methyl lysine rabbit pab  (ABclonal Biotechnology)
94
ABclonal Biotechnology pan mono methyl lysine rabbit pab
a Codon–anticodon stability. Drop-off of P-site peptidyl-tRNA Phe from the UUU C (gray) or m 1 Ψm 1 Ψm 1 Ψ C (maroon) codon and of P-site peptidyl-tRNA Ala from the GCA U codon (black). Shown are mean values with error bars representing SE from n = 3 independent biological replicates. Asterisks represent statistically significant differences between UUU C and m 1 Ψm 1 Ψm 1 Ψ C, according to a two-way repeated-measures ANOVA test. ** P = 0.0041 (F(1, 4) = 34.90; df = 1). Lines are single (black) or double (gray and maroon) exponential decay functions (“Methods” section). Exact values are summarized in Supplementary Table . b Schematic of smFRET experiment to monitor tRNA state in the P site. In the P/P state, peptidyl-tRNA Phe (Cy5) (purple star) resides far from <t>L11-Cy3</t> (green star; FRET 0.2). Transition to the CHI state leads to an increase in FRET to 0.4. mRNA is shown as a solid line, with codons depicted as bold lines. c Static traces. Representative smFRET time trace of donor Cy3 (green) and acceptor Cy5 (purple) fluorescence intensities (F.I.), calculated FRET (blue), and hidden Markov modeling fit (HMM, black), corresponding to peptidyl-tRNA Phe in the P/P state (FRET 0.2). arb. units, arbitrary units. d Dynamic traces. Same as ( c ) for traces showing reversible transitions between FRET 0.2 (P/P) and FRET 0.35 states (CHI). e Percentage of traces showing stable FRET 0.2 (P/P; gray) and fluctuations between FRET 0.2 and FRET 0.35 (CHI) states (maroon) on UUU C and m 1 Ψm 1 Ψm 1 Ψ C codons. Shown are values of individual replicates (black circles) and the mean with error bars representing SE from n = 3 independent biological replicates, each with n = 10 technical replicates. Exact values are summarized in Supplementary Table . Number of traces ( N ): P/P, N = 671 for UUU C, N = 576 for m 1 Ψm 1 Ψm 1 Ψ C; CHI, N = 163 for UUU C, N = 324 for m 1 Ψm 1 Ψm 1 Ψ C. f FRET population distribution histogram of the POST complex on UUU and m 1 Ψm 1 Ψm 1 Ψ, showing the relative abundance of the P/P (gray shade) and CHI (maroon shade) states. Shown are data from n = 3 biological replicates, with n = 10 technical replicates each. Exact values are summarized in Supplementary Table . Source data are provided as a Source Data file.
Pan Mono Methyl Lysine Rabbit Pab, supplied by ABclonal Biotechnology, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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fluorolinktm cy5 5 monofunctional dye  (Cytiva Europe)
89
Cytiva Europe fluorolinktm cy5 5 monofunctional dye
a Codon–anticodon stability. Drop-off of P-site peptidyl-tRNA Phe from the UUU C (gray) or m 1 Ψm 1 Ψm 1 Ψ C (maroon) codon and of P-site peptidyl-tRNA Ala from the GCA U codon (black). Shown are mean values with error bars representing SE from n = 3 independent biological replicates. Asterisks represent statistically significant differences between UUU C and m 1 Ψm 1 Ψm 1 Ψ C, according to a two-way repeated-measures ANOVA test. ** P = 0.0041 (F(1, 4) = 34.90; df = 1). Lines are single (black) or double (gray and maroon) exponential decay functions (“Methods” section). Exact values are summarized in Supplementary Table . b Schematic of smFRET experiment to monitor tRNA state in the P site. In the P/P state, peptidyl-tRNA Phe (Cy5) (purple star) resides far from <t>L11-Cy3</t> (green star; FRET 0.2). Transition to the CHI state leads to an increase in FRET to 0.4. mRNA is shown as a solid line, with codons depicted as bold lines. c Static traces. Representative smFRET time trace of donor Cy3 (green) and acceptor Cy5 (purple) fluorescence intensities (F.I.), calculated FRET (blue), and hidden Markov modeling fit (HMM, black), corresponding to peptidyl-tRNA Phe in the P/P state (FRET 0.2). arb. units, arbitrary units. d Dynamic traces. Same as ( c ) for traces showing reversible transitions between FRET 0.2 (P/P) and FRET 0.35 states (CHI). e Percentage of traces showing stable FRET 0.2 (P/P; gray) and fluctuations between FRET 0.2 and FRET 0.35 (CHI) states (maroon) on UUU C and m 1 Ψm 1 Ψm 1 Ψ C codons. Shown are values of individual replicates (black circles) and the mean with error bars representing SE from n = 3 independent biological replicates, each with n = 10 technical replicates. Exact values are summarized in Supplementary Table . Number of traces ( N ): P/P, N = 671 for UUU C, N = 576 for m 1 Ψm 1 Ψm 1 Ψ C; CHI, N = 163 for UUU C, N = 324 for m 1 Ψm 1 Ψm 1 Ψ C. f FRET population distribution histogram of the POST complex on UUU and m 1 Ψm 1 Ψm 1 Ψ, showing the relative abundance of the P/P (gray shade) and CHI (maroon shade) states. Shown are data from n = 3 biological replicates, with n = 10 technical replicates each. Exact values are summarized in Supplementary Table . Source data are provided as a Source Data file.
Fluorolinktm Cy5 5 Monofunctional Dye, supplied by Cytiva Europe, used in various techniques. Bioz Stars score: 89/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/mono-+or+biexponential+decay+models+embedded+in+the+originlab+originpro+2018+software/Cy5%2E5+Mono-Reactive+Dye+Pack/pm42800331-69-17-21
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mono simoa hd x v2 advantage kit  (Quanterix)
99
Quanterix mono simoa hd x v2 advantage kit
a Codon–anticodon stability. Drop-off of P-site peptidyl-tRNA Phe from the UUU C (gray) or m 1 Ψm 1 Ψm 1 Ψ C (maroon) codon and of P-site peptidyl-tRNA Ala from the GCA U codon (black). Shown are mean values with error bars representing SE from n = 3 independent biological replicates. Asterisks represent statistically significant differences between UUU C and m 1 Ψm 1 Ψm 1 Ψ C, according to a two-way repeated-measures ANOVA test. ** P = 0.0041 (F(1, 4) = 34.90; df = 1). Lines are single (black) or double (gray and maroon) exponential decay functions (“Methods” section). Exact values are summarized in Supplementary Table . b Schematic of smFRET experiment to monitor tRNA state in the P site. In the P/P state, peptidyl-tRNA Phe (Cy5) (purple star) resides far from <t>L11-Cy3</t> (green star; FRET 0.2). Transition to the CHI state leads to an increase in FRET to 0.4. mRNA is shown as a solid line, with codons depicted as bold lines. c Static traces. Representative smFRET time trace of donor Cy3 (green) and acceptor Cy5 (purple) fluorescence intensities (F.I.), calculated FRET (blue), and hidden Markov modeling fit (HMM, black), corresponding to peptidyl-tRNA Phe in the P/P state (FRET 0.2). arb. units, arbitrary units. d Dynamic traces. Same as ( c ) for traces showing reversible transitions between FRET 0.2 (P/P) and FRET 0.35 states (CHI). e Percentage of traces showing stable FRET 0.2 (P/P; gray) and fluctuations between FRET 0.2 and FRET 0.35 (CHI) states (maroon) on UUU C and m 1 Ψm 1 Ψm 1 Ψ C codons. Shown are values of individual replicates (black circles) and the mean with error bars representing SE from n = 3 independent biological replicates, each with n = 10 technical replicates. Exact values are summarized in Supplementary Table . Number of traces ( N ): P/P, N = 671 for UUU C, N = 576 for m 1 Ψm 1 Ψm 1 Ψ C; CHI, N = 163 for UUU C, N = 324 for m 1 Ψm 1 Ψm 1 Ψ C. f FRET population distribution histogram of the POST complex on UUU and m 1 Ψm 1 Ψm 1 Ψ, showing the relative abundance of the P/P (gray shade) and CHI (maroon shade) states. Shown are data from n = 3 biological replicates, with n = 10 technical replicates each. Exact values are summarized in Supplementary Table . Source data are provided as a Source Data file.
Mono Simoa Hd X V2 Advantage Kit, supplied by Quanterix, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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monochrome/nir video camera  (Med Associates Inc)
94
Med Associates Inc monochrome/nir video camera
a Codon–anticodon stability. Drop-off of P-site peptidyl-tRNA Phe from the UUU C (gray) or m 1 Ψm 1 Ψm 1 Ψ C (maroon) codon and of P-site peptidyl-tRNA Ala from the GCA U codon (black). Shown are mean values with error bars representing SE from n = 3 independent biological replicates. Asterisks represent statistically significant differences between UUU C and m 1 Ψm 1 Ψm 1 Ψ C, according to a two-way repeated-measures ANOVA test. ** P = 0.0041 (F(1, 4) = 34.90; df = 1). Lines are single (black) or double (gray and maroon) exponential decay functions (“Methods” section). Exact values are summarized in Supplementary Table . b Schematic of smFRET experiment to monitor tRNA state in the P site. In the P/P state, peptidyl-tRNA Phe (Cy5) (purple star) resides far from <t>L11-Cy3</t> (green star; FRET 0.2). Transition to the CHI state leads to an increase in FRET to 0.4. mRNA is shown as a solid line, with codons depicted as bold lines. c Static traces. Representative smFRET time trace of donor Cy3 (green) and acceptor Cy5 (purple) fluorescence intensities (F.I.), calculated FRET (blue), and hidden Markov modeling fit (HMM, black), corresponding to peptidyl-tRNA Phe in the P/P state (FRET 0.2). arb. units, arbitrary units. d Dynamic traces. Same as ( c ) for traces showing reversible transitions between FRET 0.2 (P/P) and FRET 0.35 states (CHI). e Percentage of traces showing stable FRET 0.2 (P/P; gray) and fluctuations between FRET 0.2 and FRET 0.35 (CHI) states (maroon) on UUU C and m 1 Ψm 1 Ψm 1 Ψ C codons. Shown are values of individual replicates (black circles) and the mean with error bars representing SE from n = 3 independent biological replicates, each with n = 10 technical replicates. Exact values are summarized in Supplementary Table . Number of traces ( N ): P/P, N = 671 for UUU C, N = 576 for m 1 Ψm 1 Ψm 1 Ψ C; CHI, N = 163 for UUU C, N = 324 for m 1 Ψm 1 Ψm 1 Ψ C. f FRET population distribution histogram of the POST complex on UUU and m 1 Ψm 1 Ψm 1 Ψ, showing the relative abundance of the P/P (gray shade) and CHI (maroon shade) states. Shown are data from n = 3 biological replicates, with n = 10 technical replicates each. Exact values are summarized in Supplementary Table . Source data are provided as a Source Data file.
Monochrome/Nir Video Camera, supplied by Med Associates Inc, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/mono-+or+biexponential+decay+models+embedded+in+the+originlab+originpro+2018+software/Monochrome%2FNIR+Video+Camera/custom%40vid-cam-mono-4%4010%2E64898%2F2026%2E08%2E21%2E745892
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p63 rabbit mono tp63 1423r nsj bio v3815 100ug  (NSJ Bioreagents)
90
NSJ Bioreagents p63 rabbit mono tp63 1423r nsj bio v3815 100ug
a Codon–anticodon stability. Drop-off of P-site peptidyl-tRNA Phe from the UUU C (gray) or m 1 Ψm 1 Ψm 1 Ψ C (maroon) codon and of P-site peptidyl-tRNA Ala from the GCA U codon (black). Shown are mean values with error bars representing SE from n = 3 independent biological replicates. Asterisks represent statistically significant differences between UUU C and m 1 Ψm 1 Ψm 1 Ψ C, according to a two-way repeated-measures ANOVA test. ** P = 0.0041 (F(1, 4) = 34.90; df = 1). Lines are single (black) or double (gray and maroon) exponential decay functions (“Methods” section). Exact values are summarized in Supplementary Table . b Schematic of smFRET experiment to monitor tRNA state in the P site. In the P/P state, peptidyl-tRNA Phe (Cy5) (purple star) resides far from <t>L11-Cy3</t> (green star; FRET 0.2). Transition to the CHI state leads to an increase in FRET to 0.4. mRNA is shown as a solid line, with codons depicted as bold lines. c Static traces. Representative smFRET time trace of donor Cy3 (green) and acceptor Cy5 (purple) fluorescence intensities (F.I.), calculated FRET (blue), and hidden Markov modeling fit (HMM, black), corresponding to peptidyl-tRNA Phe in the P/P state (FRET 0.2). arb. units, arbitrary units. d Dynamic traces. Same as ( c ) for traces showing reversible transitions between FRET 0.2 (P/P) and FRET 0.35 states (CHI). e Percentage of traces showing stable FRET 0.2 (P/P; gray) and fluctuations between FRET 0.2 and FRET 0.35 (CHI) states (maroon) on UUU C and m 1 Ψm 1 Ψm 1 Ψ C codons. Shown are values of individual replicates (black circles) and the mean with error bars representing SE from n = 3 independent biological replicates, each with n = 10 technical replicates. Exact values are summarized in Supplementary Table . Number of traces ( N ): P/P, N = 671 for UUU C, N = 576 for m 1 Ψm 1 Ψm 1 Ψ C; CHI, N = 163 for UUU C, N = 324 for m 1 Ψm 1 Ψm 1 Ψ C. f FRET population distribution histogram of the POST complex on UUU and m 1 Ψm 1 Ψm 1 Ψ, showing the relative abundance of the P/P (gray shade) and CHI (maroon shade) states. Shown are data from n = 3 biological replicates, with n = 10 technical replicates each. Exact values are summarized in Supplementary Table . Source data are provided as a Source Data file.
P63 Rabbit Mono Tp63 1423r Nsj Bio V3815 100ug, supplied by NSJ Bioreagents, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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mehp d4  (MedChemExpress)
94
MedChemExpress mehp d4
a Codon–anticodon stability. Drop-off of P-site peptidyl-tRNA Phe from the UUU C (gray) or m 1 Ψm 1 Ψm 1 Ψ C (maroon) codon and of P-site peptidyl-tRNA Ala from the GCA U codon (black). Shown are mean values with error bars representing SE from n = 3 independent biological replicates. Asterisks represent statistically significant differences between UUU C and m 1 Ψm 1 Ψm 1 Ψ C, according to a two-way repeated-measures ANOVA test. ** P = 0.0041 (F(1, 4) = 34.90; df = 1). Lines are single (black) or double (gray and maroon) exponential decay functions (“Methods” section). Exact values are summarized in Supplementary Table . b Schematic of smFRET experiment to monitor tRNA state in the P site. In the P/P state, peptidyl-tRNA Phe (Cy5) (purple star) resides far from <t>L11-Cy3</t> (green star; FRET 0.2). Transition to the CHI state leads to an increase in FRET to 0.4. mRNA is shown as a solid line, with codons depicted as bold lines. c Static traces. Representative smFRET time trace of donor Cy3 (green) and acceptor Cy5 (purple) fluorescence intensities (F.I.), calculated FRET (blue), and hidden Markov modeling fit (HMM, black), corresponding to peptidyl-tRNA Phe in the P/P state (FRET 0.2). arb. units, arbitrary units. d Dynamic traces. Same as ( c ) for traces showing reversible transitions between FRET 0.2 (P/P) and FRET 0.35 states (CHI). e Percentage of traces showing stable FRET 0.2 (P/P; gray) and fluctuations between FRET 0.2 and FRET 0.35 (CHI) states (maroon) on UUU C and m 1 Ψm 1 Ψm 1 Ψ C codons. Shown are values of individual replicates (black circles) and the mean with error bars representing SE from n = 3 independent biological replicates, each with n = 10 technical replicates. Exact values are summarized in Supplementary Table . Number of traces ( N ): P/P, N = 671 for UUU C, N = 576 for m 1 Ψm 1 Ψm 1 Ψ C; CHI, N = 163 for UUU C, N = 324 for m 1 Ψm 1 Ψm 1 Ψ C. f FRET population distribution histogram of the POST complex on UUU and m 1 Ψm 1 Ψm 1 Ψ, showing the relative abundance of the P/P (gray shade) and CHI (maroon shade) states. Shown are data from n = 3 biological replicates, with n = 10 technical replicates each. Exact values are summarized in Supplementary Table . Source data are provided as a Source Data file.
Mehp D4, supplied by MedChemExpress, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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triton x 100  (MedChemExpress)
94
MedChemExpress triton x 100
a Codon–anticodon stability. Drop-off of P-site peptidyl-tRNA Phe from the UUU C (gray) or m 1 Ψm 1 Ψm 1 Ψ C (maroon) codon and of P-site peptidyl-tRNA Ala from the GCA U codon (black). Shown are mean values with error bars representing SE from n = 3 independent biological replicates. Asterisks represent statistically significant differences between UUU C and m 1 Ψm 1 Ψm 1 Ψ C, according to a two-way repeated-measures ANOVA test. ** P = 0.0041 (F(1, 4) = 34.90; df = 1). Lines are single (black) or double (gray and maroon) exponential decay functions (“Methods” section). Exact values are summarized in Supplementary Table . b Schematic of smFRET experiment to monitor tRNA state in the P site. In the P/P state, peptidyl-tRNA Phe (Cy5) (purple star) resides far from <t>L11-Cy3</t> (green star; FRET 0.2). Transition to the CHI state leads to an increase in FRET to 0.4. mRNA is shown as a solid line, with codons depicted as bold lines. c Static traces. Representative smFRET time trace of donor Cy3 (green) and acceptor Cy5 (purple) fluorescence intensities (F.I.), calculated FRET (blue), and hidden Markov modeling fit (HMM, black), corresponding to peptidyl-tRNA Phe in the P/P state (FRET 0.2). arb. units, arbitrary units. d Dynamic traces. Same as ( c ) for traces showing reversible transitions between FRET 0.2 (P/P) and FRET 0.35 states (CHI). e Percentage of traces showing stable FRET 0.2 (P/P; gray) and fluctuations between FRET 0.2 and FRET 0.35 (CHI) states (maroon) on UUU C and m 1 Ψm 1 Ψm 1 Ψ C codons. Shown are values of individual replicates (black circles) and the mean with error bars representing SE from n = 3 independent biological replicates, each with n = 10 technical replicates. Exact values are summarized in Supplementary Table . Number of traces ( N ): P/P, N = 671 for UUU C, N = 576 for m 1 Ψm 1 Ψm 1 Ψ C; CHI, N = 163 for UUU C, N = 324 for m 1 Ψm 1 Ψm 1 Ψ C. f FRET population distribution histogram of the POST complex on UUU and m 1 Ψm 1 Ψm 1 Ψ, showing the relative abundance of the P/P (gray shade) and CHI (maroon shade) states. Shown are data from n = 3 biological replicates, with n = 10 technical replicates each. Exact values are summarized in Supplementary Table . Source data are provided as a Source Data file.
Triton X 100, supplied by MedChemExpress, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/mono-+or+biexponential+decay+models+embedded+in+the+originlab+originpro+2018+software/Polyethylene+glycol+mono(4-tert-octylphenyl)+ether+surfactant/pm42270026-75-27-31
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mono sulfo nhs nanogold  (Nanoprobes Inc)
86
Nanoprobes Inc mono sulfo nhs nanogold
a Codon–anticodon stability. Drop-off of P-site peptidyl-tRNA Phe from the UUU C (gray) or m 1 Ψm 1 Ψm 1 Ψ C (maroon) codon and of P-site peptidyl-tRNA Ala from the GCA U codon (black). Shown are mean values with error bars representing SE from n = 3 independent biological replicates. Asterisks represent statistically significant differences between UUU C and m 1 Ψm 1 Ψm 1 Ψ C, according to a two-way repeated-measures ANOVA test. ** P = 0.0041 (F(1, 4) = 34.90; df = 1). Lines are single (black) or double (gray and maroon) exponential decay functions (“Methods” section). Exact values are summarized in Supplementary Table . b Schematic of smFRET experiment to monitor tRNA state in the P site. In the P/P state, peptidyl-tRNA Phe (Cy5) (purple star) resides far from <t>L11-Cy3</t> (green star; FRET 0.2). Transition to the CHI state leads to an increase in FRET to 0.4. mRNA is shown as a solid line, with codons depicted as bold lines. c Static traces. Representative smFRET time trace of donor Cy3 (green) and acceptor Cy5 (purple) fluorescence intensities (F.I.), calculated FRET (blue), and hidden Markov modeling fit (HMM, black), corresponding to peptidyl-tRNA Phe in the P/P state (FRET 0.2). arb. units, arbitrary units. d Dynamic traces. Same as ( c ) for traces showing reversible transitions between FRET 0.2 (P/P) and FRET 0.35 states (CHI). e Percentage of traces showing stable FRET 0.2 (P/P; gray) and fluctuations between FRET 0.2 and FRET 0.35 (CHI) states (maroon) on UUU C and m 1 Ψm 1 Ψm 1 Ψ C codons. Shown are values of individual replicates (black circles) and the mean with error bars representing SE from n = 3 independent biological replicates, each with n = 10 technical replicates. Exact values are summarized in Supplementary Table . Number of traces ( N ): P/P, N = 671 for UUU C, N = 576 for m 1 Ψm 1 Ψm 1 Ψ C; CHI, N = 163 for UUU C, N = 324 for m 1 Ψm 1 Ψm 1 Ψ C. f FRET population distribution histogram of the POST complex on UUU and m 1 Ψm 1 Ψm 1 Ψ, showing the relative abundance of the P/P (gray shade) and CHI (maroon shade) states. Shown are data from n = 3 biological replicates, with n = 10 technical replicates each. Exact values are summarized in Supplementary Table . Source data are provided as a Source Data file.
Mono Sulfo Nhs Nanogold, supplied by Nanoprobes Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/mono-+or+biexponential+decay+models+embedded+in+the+originlab+originpro+2018+software/mono+nanogold+nhs+sulfo/us12648916-230-15-19
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cy3  (Cytiva Europe)
94
Cytiva Europe cy3
a Codon–anticodon stability. Drop-off of P-site peptidyl-tRNA Phe from the UUU C (gray) or m 1 Ψm 1 Ψm 1 Ψ C (maroon) codon and of P-site peptidyl-tRNA Ala from the GCA U codon (black). Shown are mean values with error bars representing SE from n = 3 independent biological replicates. Asterisks represent statistically significant differences between UUU C and m 1 Ψm 1 Ψm 1 Ψ C, according to a two-way repeated-measures ANOVA test. ** P = 0.0041 (F(1, 4) = 34.90; df = 1). Lines are single (black) or double (gray and maroon) exponential decay functions (“Methods” section). Exact values are summarized in Supplementary Table . b Schematic of smFRET experiment to monitor tRNA state in the P site. In the P/P state, peptidyl-tRNA Phe (Cy5) (purple star) resides far from <t>L11-Cy3</t> (green star; FRET 0.2). Transition to the CHI state leads to an increase in FRET to 0.4. mRNA is shown as a solid line, with codons depicted as bold lines. c Static traces. Representative smFRET time trace of donor Cy3 (green) and acceptor Cy5 (purple) fluorescence intensities (F.I.), calculated FRET (blue), and hidden Markov modeling fit (HMM, black), corresponding to peptidyl-tRNA Phe in the P/P state (FRET 0.2). arb. units, arbitrary units. d Dynamic traces. Same as ( c ) for traces showing reversible transitions between FRET 0.2 (P/P) and FRET 0.35 states (CHI). e Percentage of traces showing stable FRET 0.2 (P/P; gray) and fluctuations between FRET 0.2 and FRET 0.35 (CHI) states (maroon) on UUU C and m 1 Ψm 1 Ψm 1 Ψ C codons. Shown are values of individual replicates (black circles) and the mean with error bars representing SE from n = 3 independent biological replicates, each with n = 10 technical replicates. Exact values are summarized in Supplementary Table . Number of traces ( N ): P/P, N = 671 for UUU C, N = 576 for m 1 Ψm 1 Ψm 1 Ψ C; CHI, N = 163 for UUU C, N = 324 for m 1 Ψm 1 Ψm 1 Ψ C. f FRET population distribution histogram of the POST complex on UUU and m 1 Ψm 1 Ψm 1 Ψ, showing the relative abundance of the P/P (gray shade) and CHI (maroon shade) states. Shown are data from n = 3 biological replicates, with n = 10 technical replicates each. Exact values are summarized in Supplementary Table . Source data are provided as a Source Data file.
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a Codon–anticodon stability. Drop-off of P-site peptidyl-tRNA Phe from the UUU C (gray) or m 1 Ψm 1 Ψm 1 Ψ C (maroon) codon and of P-site peptidyl-tRNA Ala from the GCA U codon (black). Shown are mean values with error bars representing SE from n = 3 independent biological replicates. Asterisks represent statistically significant differences between UUU C and m 1 Ψm 1 Ψm 1 Ψ C, according to a two-way repeated-measures ANOVA test. ** P = 0.0041 (F(1, 4) = 34.90; df = 1). Lines are single (black) or double (gray and maroon) exponential decay functions (“Methods” section). Exact values are summarized in Supplementary Table . b Schematic of smFRET experiment to monitor tRNA state in the P site. In the P/P state, peptidyl-tRNA Phe (Cy5) (purple star) resides far from L11-Cy3 (green star; FRET 0.2). Transition to the CHI state leads to an increase in FRET to 0.4. mRNA is shown as a solid line, with codons depicted as bold lines. c Static traces. Representative smFRET time trace of donor Cy3 (green) and acceptor Cy5 (purple) fluorescence intensities (F.I.), calculated FRET (blue), and hidden Markov modeling fit (HMM, black), corresponding to peptidyl-tRNA Phe in the P/P state (FRET 0.2). arb. units, arbitrary units. d Dynamic traces. Same as ( c ) for traces showing reversible transitions between FRET 0.2 (P/P) and FRET 0.35 states (CHI). e Percentage of traces showing stable FRET 0.2 (P/P; gray) and fluctuations between FRET 0.2 and FRET 0.35 (CHI) states (maroon) on UUU C and m 1 Ψm 1 Ψm 1 Ψ C codons. Shown are values of individual replicates (black circles) and the mean with error bars representing SE from n = 3 independent biological replicates, each with n = 10 technical replicates. Exact values are summarized in Supplementary Table . Number of traces ( N ): P/P, N = 671 for UUU C, N = 576 for m 1 Ψm 1 Ψm 1 Ψ C; CHI, N = 163 for UUU C, N = 324 for m 1 Ψm 1 Ψm 1 Ψ C. f FRET population distribution histogram of the POST complex on UUU and m 1 Ψm 1 Ψm 1 Ψ, showing the relative abundance of the P/P (gray shade) and CHI (maroon shade) states. Shown are data from n = 3 biological replicates, with n = 10 technical replicates each. Exact values are summarized in Supplementary Table . Source data are provided as a Source Data file.

Journal: Nature Communications

Article Title: Recoding by N 1 -methylpseudouridine guides rational mRNA vaccine design

doi: 10.1038/s41467-026-77796-3

Figure Lengend Snippet: a Codon–anticodon stability. Drop-off of P-site peptidyl-tRNA Phe from the UUU C (gray) or m 1 Ψm 1 Ψm 1 Ψ C (maroon) codon and of P-site peptidyl-tRNA Ala from the GCA U codon (black). Shown are mean values with error bars representing SE from n = 3 independent biological replicates. Asterisks represent statistically significant differences between UUU C and m 1 Ψm 1 Ψm 1 Ψ C, according to a two-way repeated-measures ANOVA test. ** P = 0.0041 (F(1, 4) = 34.90; df = 1). Lines are single (black) or double (gray and maroon) exponential decay functions (“Methods” section). Exact values are summarized in Supplementary Table . b Schematic of smFRET experiment to monitor tRNA state in the P site. In the P/P state, peptidyl-tRNA Phe (Cy5) (purple star) resides far from L11-Cy3 (green star; FRET 0.2). Transition to the CHI state leads to an increase in FRET to 0.4. mRNA is shown as a solid line, with codons depicted as bold lines. c Static traces. Representative smFRET time trace of donor Cy3 (green) and acceptor Cy5 (purple) fluorescence intensities (F.I.), calculated FRET (blue), and hidden Markov modeling fit (HMM, black), corresponding to peptidyl-tRNA Phe in the P/P state (FRET 0.2). arb. units, arbitrary units. d Dynamic traces. Same as ( c ) for traces showing reversible transitions between FRET 0.2 (P/P) and FRET 0.35 states (CHI). e Percentage of traces showing stable FRET 0.2 (P/P; gray) and fluctuations between FRET 0.2 and FRET 0.35 (CHI) states (maroon) on UUU C and m 1 Ψm 1 Ψm 1 Ψ C codons. Shown are values of individual replicates (black circles) and the mean with error bars representing SE from n = 3 independent biological replicates, each with n = 10 technical replicates. Exact values are summarized in Supplementary Table . Number of traces ( N ): P/P, N = 671 for UUU C, N = 576 for m 1 Ψm 1 Ψm 1 Ψ C; CHI, N = 163 for UUU C, N = 324 for m 1 Ψm 1 Ψm 1 Ψ C. f FRET population distribution histogram of the POST complex on UUU and m 1 Ψm 1 Ψm 1 Ψ, showing the relative abundance of the P/P (gray shade) and CHI (maroon shade) states. Shown are data from n = 3 biological replicates, with n = 10 technical replicates each. Exact values are summarized in Supplementary Table . Source data are provided as a Source Data file.

Article Snippet: L11 expression, purification, Cy3-maleimide (Cytiva, PA23031) labeling and 70S(L11-Cy3) reconstitution were performed as described .

Techniques: Stability, Fluorescence